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Binary logs and replication improvements

Due to continuous development, Percona Server for MySQL incorporated a number of improvements related to replication and binary logs handling. This resulted in replication specifics, which distinguishes it from MySQL.

Safety of statements with a LIMIT clause

Summary of the fix

MySQL considers all UPDATE/DELETE/INSERT ... SELECT statements with LIMIT clause to be unsafe, no matter wether they are really producing non-deterministic result or not, and switches from statement-based logging to row-based one. Percona Server for MySQL is more accurate, it acknowledges such instructions as safe when they include ORDER BY PK or WHERE condition. This fix has been ported from the upstream bug report #42415 (#44).

Performance improvement on relay log position update

Relay log position fix

MySQL always updated relay log position in multi-source replications setups regardless of whether the committed transaction has already been executed or not. Percona Server omits relay log position updates for the already logged GTIDs.

Relay log position details

Particularly, such unconditional relay log position updates caused additional fsync operations in case of relay-log-info-repository=TABLE, and with the higher number of channels transmitting such duplicate (already executed) transactions the situation became proportionally worse. Bug fixed #1786 (upstream #85141).

Performance improvement on source and connection status updates

Source and connection status update fix

Replica nodes configured to update source status and connection information only on log file rotation did not experience the expected reduction in load. MySQL was additionally updating this information in case of multi-source replication when replica had to skip the already executed GTID event.

Source and connection status details

The configuration with master_info_repository=TABLE and sync_master_info=0 makes replica to update source status and connection information in this table on log file rotation and not after each sync_master_info event, but it didn’t work on multi-source replication setups. Heartbeats sent to the replica to skip GTID events which it had already executed previously, were evaluated as relay log rotation events and reacted with mysql.slave_master_info table sync. This inaccuracy could produce huge (up to 5 times on some setups) increase in write load on the replica, before this problem was fixed in Percona Server for MySQL. Bug fixed #1812 (upstream #85158).

Write FLUSH commands to the binary log

FLUSH commands, such as FLUSH SLOW LOGS, are not written to the binary log if the system variable binlog_skip_flush_commands is set to ON.

In addition, the following changes were implemented in the behavior of read_only and super_read_only modes:

  • When read_only is set to ON, any FLUSH ... command executed by a normal user (without the SUPER privilege) are not written to the binary log regardless of the value of the binlog_skip_flush_command variable.

  • When super_read_only is set to ON, any FLUSH ... command executed by any user (even by those with the SUPER privilege) are not written to the binary log regardless of the value of the binlog_skip_flush_commands variable.

An attempt to run a FLUSH command without either SUPER or RELOAD privileges results in the ER_SPECIFIC_ACCESS_DENIED_ERROR exception regardless of the value of the binlog_skip_flush_commands variable.

binlog_skip_flush_commands

Option Description
Command-line Yes
Config file Yes
Scope Global
Dynamic Yes
Default OFF

This variable was introduced in Percona Server for MySQL 8.0.15-5.

When binlog_skip_flush_commands is set to ON, FLUSH ... commands are not written to the binary log. See Writing FLUSH Commands to the Binary Log for more information about what else affects the writing of FLUSH commands to the binary log.

Note

FLUSH LOGS, FLUSH BINARY LOGS, FLUSH TABLES WITH READ LOCK, and FLUSH TABLES ... FOR EXPORT are not written to the binary log no matter what value the binlog_skip_flush_commands variable contains. The FLUSH command is not recorded to the binary log and the value of binlog_skip_flush_commands is ignored if the FLUSH command is run with the NO_WRITE_TO_BINLOG keyword (or its alias LOCAL).

Maintaining comments with DROP TABLE

When you issue a DROP TABLE command, the binary log stores the command but removes comments and encloses the table name in quotation marks. If you require the binary log to maintain the comments and not add quotation marks, enable binlog_ddl_skip_rewrite.

binlog_ddl_skip_rewrite

Option Description
Command-line Yes
Config file Yes
Scope Global
Dynamic Yes
Default OFF

This variable was introduced in Percona Server for MySQL 8.0.26-16.

If the variable is enabled, single table DROP TABLE DDL statements are logged in the binary log with comments. Multi-table DROP TABLE DDL statements are not supported and return an error.

SET binlog_ddl_skip_rewrite = ON;
/*comment at start*/DROP TABLE t /*comment at end*/;

Binary log user-defined functions

To implement Point in Time recovery, we have added the binlog_utils_udf plugin. These functions help you locate specific transactions in binary logs and determine which binary log files contain particular GTIDs, which is essential for precise point-in-time recovery operations.

Prerequisites

Before using these functions, ensure that:

  • Binary logging is enabled on your MySQL server

  • You have the SYSTEM_VARIABLES_ADMIN and SERVICE_CONNECTION_ADMIN privileges to install plugins

  • SYSTEM_VARIABLES_ADMIN: Allows modification of system variables at runtime

  • SERVICE_CONNECTION_ADMIN: Allows management of service connections and administrative operations

  • You have read access to the binary log directory

  • GTID-based replication is configured (for GTID-related functions)

Installation

Before using the user-defined functions, you must install the plugin:

INSTALL PLUGIN binlog_utils_udf SONAME 'binlog_utils_udf.so';

After installation, you can verify the plugin is loaded by checking the INFORMATION_SCHEMA.PLUGINS table:

SELECT PLUGIN_NAME, PLUGIN_STATUS FROM INFORMATION_SCHEMA.PLUGINS WHERE PLUGIN_NAME = 'binlog_utils_udf';

To verify that the UDFs are available, you can check the mysql.func table or performance_schema.user_defined_functions:

SELECT * FROM mysql.func WHERE name LIKE 'get_%';
SELECT * FROM performance_schema.user_defined_functions WHERE name LIKE 'get_%';

Understanding GTIDs

A Global Transaction Identifier (GTID) is a unique identifier for each transaction in a MySQL replication setup. GTIDs help ensure data consistency and enable precise point-in-time recovery. GTIDs follow the format source_id:transaction_id, where source_id is the server’s UUID and transaction_id is a sequence number.

When using these user-defined functions, you must use CAST to return a result. For example:

SELECT CAST(get_last_gtid_from_binlog("binlog.0001") AS CHAR) as result;

Available functions

The following user-defined functions are included:

Function Returns Description Use Case
get_binlog_by_gtid(gtid) STRING (binlog name) Returns the binary log file that contains the specified GTID Find which binary log contains a specific transaction
get_last_gtid_from_binlog(binlog) STRING (GTID) Returns the last GTID found in the specified binary log Identify the final transaction in a binary log file
get_gtid_set_by_binlog(binlog) STRING (GTID set) Returns all GTIDs found in the specified binary log Get complete list of transactions in a binary log
get_binlog_by_gtid_set(gtid_set) STRING (binlog name) Returns the first binary log file that contains at least one GTID from the specified set Find binary log containing any transaction from a GTID set
get_first_record_timestamp_by_binlog(binlog) INTEGER (timestamp) Returns the timestamp of the first event in the specified binary log Determine when a binary log file started
get_last_record_timestamp_by_binlog(binlog) INTEGER (timestamp) Returns the timestamp of the last event in the specified binary log Determine when a binary log file ended

Important notes

  • CAST requirement: When using these user-defined functions, you must use CAST to return a result. String functions require CAST(...AS CHAR) and timestamp functions require CAST(...AS UNSIGNED).

  • Timestamp precision: Timestamp-returning functions provide values with microsecond precision in UNIX time format. Each value represents the number of microseconds since 1970-01-01 00:00:00 UTC.

  • Binary log file names: Functions that accept a binary log name require only the short file name (for example, binlog.000001). Do not include the full path. If the input contains a path separator (/), the server returns an error.

  • Binary log directory: The server reads binary logs from the directory defined by the @@log_bin_basename system variable.

  • Return values: Functions that return binary log file names return only the short name without the path.

  • Performance considerations: These functions read binary log files directly from disk. For large binary log files, the functions may take several seconds to complete.

Simplifying UDF usage without CAST()

While CAST() is required for proper function execution, you can configure your MySQL client to handle data type conversions automatically, reducing the need to use CAST() explicitly in your queries.

Configure the MySQL client

You can set the appropriate client character set and collation to simplify UDF usage:

-- Set client character set
SET character_set_client = 'utf8mb4';

-- Set client collation
SET collation_connection = 'utf8mb4_general_ci';

Alternatively, you can configure these settings in your MySQL client configuration file (e.g., ~/.my.cnf or /etc/mysql/my.cnf):

[client]
default-character-set=utf8mb4
default-collation=utf8mb4_general_ci

By configuring these settings, the MySQL client can handle data type conversions more effectively, allowing you to use the UDF functions without explicit CAST() statements in many cases. While client configuration can simplify usage, CAST() will still work and may be necessary in some scenarios. The choice between using CAST() explicitly or relying on client configuration depends on your specific use case and preferences.

All functions returning timestamps return their values as microsecond precision UNIX time. In other words, they represent the number of microseconds since 1-JAN-1970.

All functions accepting a binlog name as a parameter accept only short names, without a path component. If the path separator (‘/’) is found in the input, an error is returned. This restriction serves the purpose of limiting the locations from which binlogs can be read. They are always read from the current binlog directory (@@log_bin_basename system variable).

All functions returning binlog file names return the name in short form, without a path component.

get_binlog_by_gtid

Syntax:

get_binlog_by_gtid(gtid_string)

Parameters:

  • gtid_string: The GTID to search for (format: source_id:transaction_id)

Returns: Binary log file name as STRING

Example:

CREATE FUNCTION get_binlog_by_gtid RETURNS STRING SONAME 'binlog_utils_udf.so';
SELECT CAST(get_binlog_by_gtid("F6F54186-8495-47B3-8D9F-011DDB1B65B3:1") AS CHAR) AS result;
Expected output
+--------------+
| result       |
+==============+
| binlog.00001 |
+--------------+
DROP FUNCTION get_binlog_by_gtid;

get_last_gtid_from_binlog

Syntax:

get_last_gtid_from_binlog(binlog_name)

Parameters:

  • binlog_name: The binary log file name (without path)

Returns: GTID as STRING

Example:

CREATE FUNCTION get_last_gtid_from_binlog RETURNS STRING SONAME 'binlog_utils_udf.so';
SELECT CAST(get_last_gtid_from_binlog("binlog.00001") AS CHAR) AS result;
Expected output
+-----------------------------------------+
| result                                  |
+=========================================+
| F6F54186-8495-47B3-8D9F-011DDB1B65B3:10 |
+-----------------------------------------+
DROP FUNCTION get_last_gtid_from_binlog;

get_gtid_set_by_binlog

Syntax:

get_gtid_set_by_binlog(binlog_name)

Parameters:

  • binlog_name: The binary log file name (without path)

Returns: GTID set as STRING

Example:

CREATE FUNCTION get_gtid_set_by_binlog RETURNS STRING SONAME 'binlog_utils_udf.so';
SELECT CAST(get_gtid_set_by_binlog("binlog.00001") AS CHAR) AS result;
Expected output
+-------------------------+
| result                  |
+=========================+
| 11ea-b9a7:7,11ea-b9a7:8 |
+-------------------------+
DROP FUNCTION get_gtid_set_by_binlog;

get_binlog_by_gtid_set

Syntax:

get_binlog_by_gtid_set(gtid_set)

Parameters:

  • gtid_set: Comma-separated list of GTIDs to search for

Returns: Binary log file name as STRING

Example:

CREATE FUNCTION get_binlog_by_gtid_set RETURNS STRING SONAME 'binlog_utils_udf.so';
SELECT CAST(get_binlog_by_gtid_set("11ea-b9a7:7,11ea-b9a7:8") AS CHAR) AS result;
Expected output
+---------------------------------------------------------------+
| result                                                        |
+===============================================================+
| bin.000003                                                    |
+---------------------------------------------------------------+
DROP FUNCTION get_binlog_by_gtid_set;

get_first_record_timestamp_by_binlog

Syntax:

get_first_record_timestamp_by_binlog(binlog_name)

Parameters:

  • binlog_name: The binary log file name (without path)

Returns: Timestamp as INTEGER (microseconds since Unix epoch)

Example:

CREATE FUNCTION get_first_record_timestamp_by_binlog RETURNS INTEGER SONAME 'binlog_utils_udf.so';
SELECT FROM_UNIXTIME(CAST(get_first_record_timestamp_by_binlog("bin.00003") AS UNSIGNED) DIV 1000000) AS result;
Expected output
+---------------------+
| result              |
+=====================+
| 2024-12-03 09:10:40 |
+---------------------+
DROP FUNCTION get_first_record_timestamp_by_binlog;

get_last_record_timestamp_by_binlog

Syntax:

get_last_record_timestamp_by_binlog(binlog_name)

Parameters:

  • binlog_name: The binary log file name (without path)

Returns: Timestamp as INTEGER (microseconds since Unix epoch)

Example:

CREATE FUNCTION get_last_record_timestamp_by_binlog RETURNS INTEGER SONAME 'binlog_utils_udf.so';
SELECT FROM_UNIXTIME(CAST(get_last_record_timestamp_by_binlog("bin.00003") AS UNSIGNED) DIV 1000000) AS result;
Expected output
+---------------------+
| result              |
+=====================+
| 2024-12-04 04:18:56 |
+---------------------+
DROP FUNCTION get_last_record_timestamp_by_binlog;

Troubleshooting

Common issues

Function returns NULL: This usually indicates that the specified GTID or binary log file does not exist. Verify that:

  • The GTID format is correct (UUID:transaction_id)
  • The binary log file exists in the binary log directory
  • GTID is enabled on the server

Error: “Unknown function”: The plugin is not installed. Install the plugin using the INSTALL PLUGIN command.

Error: “Access denied”: You need SYSTEM_VARIABLES_ADMIN and SERVICE_CONNECTION_ADMIN privileges to install the plugin and use the functions.

Performance issues: These functions read binary log files directly from disk. For large binary log files, expect execution times of several seconds.

Verify binary log files

Check which binary log files are available:

SHOW BINARY LOGS;

Check GTID status

Verify GTID is enabled:

SHOW VARIABLES LIKE 'gtid_mode';

Function returns NULL or error:

  • Ensure the binary log file exists in the current binlog directory

  • Verify you have read permissions on the binary log files

  • Check that the binary log file name is correct and does not include a path

Plugin installation fails:

  • Verify you have the SYSTEM_VARIABLES_ADMIN and SERVICE_CONNECTION_ADMIN privileges:

  • Ensure the binlog_utils_udf.so file exists in the plugin directory

  • Check that the plugin is compatible with your MySQL version

GTID format errors:

  • Ensure GTIDs follow the correct format: source_id:transaction_id

  • Verify that GTID-based replication is enabled on your server

Timestamp conversion issues:

  • Remember that timestamps are returned in microseconds since Unix epoch

  • Use FROM_UNIXTIME() with division by 1000000 to convert to readable format

Character set and display issues:

  • This behavior is expected. UDFs developed before MySQL’s UDF API character set enhancements did not specify character sets for STRING return values, which defaulted to “binary”

  • The --binary-as-hex command line option is TRUE by default in interactive mode

  • If you see unexpected hexadecimal output from UDF functions, start the mysql client with --binary-as-hex=FALSE or add this parameter to the [client] section of your MySQL config file (no server restart required). The change takes effect on the next client connection.

  • The --binary-as-hex=FALSE option affects how binary data is displayed in the output

  • CAST operations (for example, CAST(function_name() AS CHAR)) convert binary data to character strings

Uninstalling the plugin

To uninstall the binlog_utils_udf plugin, use the following command:

UNINSTALL PLUGIN binlog_utils_udf;

The plugin cannot be disabled without uninstalling. When uninstalled, all user-defined functions provided by the plugin are automatically removed and become unavailable.

To verify removal, check the INFORMATION_SCHEMA.PLUGINS table:

SELECT PLUGIN_NAME, PLUGIN_STATUS FROM INFORMATION_SCHEMA.PLUGINS WHERE PLUGIN_NAME = 'binlog_utils_udf';

The query should return no rows if the plugin is successfully uninstalled.

Limitations

For the following variables, do not define values with one or more dot (.) characters:

A value defined with these characters is handled differently in MySQL and Percona XtraBackup and can cause unpredictable behavior.